Merge pull request #473 from ucsd-salad/feat/ignore-errors-flag

Add `--ignore-errors` to skip files with errors

.github/workflows/flake8.yml

@@ -1,18 +1,32 @@
 name: flake8
 
-on: pull_request
+concurrency:
+  group: ${{ github.ref }}
+  cancel-in-progress: true
+
+on:
+  workflow_dispatch:
+  push:
+    tags:
+      - "*"
+    branches:
+      - main
+      - master
+      - develop
+      - "release/*"
+  pull_request:
 
 jobs:
     flake8-lint:
-        runs-on: ubuntu-latest
+        runs-on: ubuntu-24.04
         name: Lint
         steps:
             - name: Check out source repository
-              uses: actions/checkout@v2
+              uses: actions/checkout@v4
             - name: Set up Python environment
-              uses: actions/setup-python@v2
+              uses: actions/setup-python@v5
               with:
-                  python-version: "3.9"
+                  python-version: "3.13"
             - name: flake8 Lint
               uses: reviewdog/action-flake8@v3
               with:

.github/workflows/tests.yml

@@ -1,50 +1,65 @@
 name: Tests and Codecov
-on: pull_request
+on:
+  push:
+    branches:
+      - master
+      - main
+      - "release/*"
+  pull_request:
+  workflow_dispatch:
+
 jobs:
     run_tests:
-        runs-on: ubuntu-latest
+        runs-on: ubuntu-24.04
         strategy:
             fail-fast: false
             matrix:
-                python-version: [3.6, 3.7, 3.8, 3.9, pypy-3.7]
+                python-version: ['3.9', '3.10', '3.11', '3.12', '3.13', 'pypy-3.10']
 
         steps:
             - name: Checkout repository
-              uses: actions/checkout@v2
+              uses: actions/checkout@v4
 
             - name: Set up Python ${{ matrix.python-version }}
-              uses: actions/setup-python@v2
+              uses: actions/setup-python@v5
               with:
                   python-version: ${{ matrix.python-version }}
 
             - name: Install dependencies
               run: |
-                  python -m pip install --upgrade pip
-                  pip install tox tox-gh-actions
+                  python -m pip install uv
+                  uv pip install --system tox tox-gh-actions
 
             - name: Test with tox
               run: tox
 
     coverage_report:
         needs: run_tests
-        runs-on: ubuntu-latest
+        runs-on: ubuntu-24.04
         steps:
             - name: Checkout repository
-              uses: actions/checkout@v2
+              uses: actions/checkout@v4
+
+            -   name: Set up Python 3.13
+                uses: actions/setup-python@v5
+                with:
+                    python-version: 3.13
 
             - name: Install dependencies
               run: |
-                  python -m pip install --upgrade pip
-                  pip install coverage docopt yarg requests
+                  python -m pip install uv
+                  uv pip install --system poetry
+                  uv pip install --system .[dev]
 
             - name: Calculate coverage
-              run: coverage run --source=pipreqs -m unittest discover
+              run: poetry run coverage run --source=pipreqs -m unittest discover
 
             - name: Create XML report
-              run: coverage xml
+              run: poetry run coverage xml
 
             - name: Upload coverage to Codecov
-              uses: codecov/codecov-action@v2
+              uses: codecov/codecov-action@v5
               with:
                   files: coverage.xml
-                  fail_ci_if_error: true
+                  token: ${{ secrets.CODECOV_TOKEN }}                  
+                  fail_ci_if_error: false

.pre-commit-config.yaml

@@ -0,0 +1,96 @@
+ci:
+    autoupdate_commit_msg: "chore: update pre-commit hooks"
+    autofix_commit_msg: "style: pre-commit fixes"
+    autoupdate_schedule: quarterly
+
+repos:
+    -   repo: https://github.com/pre-commit/pre-commit-hooks
+        rev: v5.0.0
+        hooks:
+            -   id: check-added-large-files
+                args: [ '--maxkb=1000' ]
+            -   id: check-case-conflict
+            -   id: check-merge-conflict
+            -   id: check-symlinks
+            -   id: check-yaml
+            -   id: check-toml
+            -   id: check-json
+            -   id: debug-statements
+            -   id: end-of-file-fixer
+            -   id: mixed-line-ending
+            -   id: requirements-txt-fixer
+            -   id: trailing-whitespace
+                files: ".*\\.(?:tex|py)$"
+                args: [ --markdown-linebreak-ext=md ]
+                exclude: (^notebooks/|^tests/truth/)
+            -   id: detect-private-key
+            -   id: fix-byte-order-marker
+            -   id: check-ast
+            -   id: check-docstring-first
+            -   id: debug-statements
+
+    -   repo: https://github.com/pre-commit/pygrep-hooks
+        rev: v1.10.0
+        hooks:
+            -   id: python-use-type-annotations
+            -   id: python-check-mock-methods
+            -   id: python-no-eval
+            -   id: rst-backticks
+            -   id: rst-directive-colons
+
+    -   repo: https://github.com/asottile/pyupgrade
+        rev: v3.3.1
+        hooks:
+            -   id: pyupgrade
+                args: [ --py38-plus ]
+
+    # Notebook formatting
+    -   repo: https://github.com/nbQA-dev/nbQA
+        rev: 1.9.1
+        hooks:
+            -   id: nbqa-isort
+                additional_dependencies: [ isort ]
+
+            -   id: nbqa-pyupgrade
+                additional_dependencies: [ pyupgrade ]
+                args: [ --py38-plus ]
+
+
+    -   repo: https://github.com/kynan/nbstripout
+        rev: 0.8.1
+        hooks:
+            -   id: nbstripout
+
+    -   repo: https://github.com/sondrelg/pep585-upgrade
+        rev: 'v1.0'
+        hooks:
+            -   id: upgrade-type-hints
+                args: [ '--futures=true' ]
+
+    -   repo: https://github.com/MarcoGorelli/auto-walrus
+        rev: 0.3.4
+        hooks:
+            -   id: auto-walrus
+
+    -   repo: https://github.com/python-jsonschema/check-jsonschema
+        rev: 0.30.0
+        hooks:
+            -   id: check-github-workflows
+            -   id: check-github-actions
+            -   id: check-dependabot
+            -   id: check-readthedocs
+
+    -   repo: https://github.com/dannysepler/rm_unneeded_f_str
+        rev: v0.2.0
+        hooks:
+            -   id: rm-unneeded-f-str
+
+    -   repo: https://github.com/astral-sh/ruff-pre-commit
+        rev: "v0.8.6"
+        hooks:
+            -   id: ruff
+                types_or: [ python, pyi, jupyter ]
+                args: [ --fix, --show-fixes , --line-length=120 ]  # --unsafe-fixes,
+            # Run the formatter.
+            -   id: ruff-format
+                types_or: [ python, pyi, jupyter ]

.python-version

@@ -0,0 +1,7 @@
+3.13
+3.12
+3.11
+3.10
+3.9
+3.8
+pypy3.9-7.3.12

.tool-versions

@@ -0,0 +1 @@
+python 3.13 3.12 3.11 3.10 3.9 3.8 pypy3.9-7.3.12

CONTRIBUTING.rst

@@ -61,12 +61,11 @@ Ready to contribute? Here's how to set up `pipreqs` for local development.
 2. Clone your fork locally::
 
     $ git clone git@github.com:your_name_here/pipreqs.git
-
-3. Install your local copy into a virtualenv. Assuming you have virtualenvwrapper installed, this is how you set up your fork for local development::
-
-    $ mkvirtualenv pipreqs
     $ cd pipreqs/
-    $ python setup.py develop
+
+3. Pipreqs is developed using Poetry. Refer to the `documentation <https://python-poetry.org/docs/>`_ to install Poetry in your local environment. Next, you should install pipreqs's dependencies::
+
+    $ poetry install --with dev
 
 4. Create a branch for local development::
 
@@ -76,11 +75,11 @@ Ready to contribute? Here's how to set up `pipreqs` for local development.
 
 5. When you're done making changes, check that your changes pass flake8 and the tests, including testing other Python versions with tox::
 
-    $ flake8 pipreqs tests
-    $ python setup.py test
-    $ tox
+    $ poetry run flake8 pipreqs tests
+    $ poetry run python -m unittest discover
+    $ poetry run tox
     
-   To get flake8 and tox, just pip install them into your virtualenv.
+    To test all versions of python using tox you need to have them installed and for this two options are recommended: `pyenv` or `asdf`.
 
 6. Commit your changes and push your branch to GitHub::
 
@@ -99,7 +98,7 @@ Before you submit a pull request, check that it meets these guidelines:
 2. If the pull request adds functionality, the docs should be updated. Put
    your new functionality into a function with a docstring, and add the
    feature to the list in README.rst.
-3. The pull request should work for Python 2.7, 3.4, 3.5, 3.6, and PyPy. Check
+3. The pull request should work for currently supported Python and PyPy versions. Check
    https://travis-ci.org/bndr/pipreqs/pull_requests and make sure that the
    tests pass for all supported Python versions.
 
@@ -108,4 +107,4 @@ Tips
 
 To run a subset of tests::
 
-    $ python -m unittest tests.test_pipreqs
+    $ poetry run python -m unittest tests.test_pipreqs

MANIFEST.in

@@ -1,13 +0,0 @@
-include AUTHORS.rst
-include CONTRIBUTING.rst
-include HISTORY.rst
-include LICENSE
-include README.rst
-include pipreqs/stdlib
-include pipreqs/mapping
-
-recursive-include tests *
-recursive-exclude * __pycache__
-recursive-exclude * *.py[co]
-
-recursive-include docs *.rst conf.py Makefile make.bat stdlib mapping

Makefile

@@ -6,13 +6,14 @@ help:
 	@echo "clean-pyc - remove Python file artifacts"
 	@echo "clean-test - remove test and coverage artifacts"
 	@echo "lint - check style with flake8"
-	@echo "test - run tests quickly with the default Python"
+	@echo "test - run tests quickly using the default Python"
 	@echo "test-all - run tests on every Python version with tox"
 	@echo "coverage - check code coverage quickly with the default Python"
 	@echo "docs - generate Sphinx HTML documentation, including API docs"
-	@echo "release - package and upload a release"
-	@echo "dist - package"
-	@echo "install - install the package to the active Python's site-packages"
+	@echo "publish - package and upload a release"
+	@echo "publish-to-test - package and upload a release to test-pypi"
+	@echo "build - build the package"
+	@echo "install - install the dependencies into the Poetry virtual environment"
 
 clean: clean-build clean-pyc clean-test
 
@@ -35,14 +36,13 @@ clean-test:
 	rm -fr htmlcov/
 
 lint:
-	flake8 pipreqs tests
+	poetry run flake8 pipreqs tests
 
 test:
-	pip install -r requirements.txt
-	python setup.py test
+	poetry run python -m unittest discover 
 
 test-all:
-	tox
+	poetry run tox
 
 coverage:
 	coverage run --source pipreqs setup.py test
@@ -58,13 +58,14 @@ docs:
 	$(MAKE) -C docs html
 	open docs/_build/html/index.html
 
-release: clean
-	python setup.py sdist bdist_wheel upload -r pypi
+publish: build
+	poetry publish
 
-dist: clean
-	python setup.py sdist
-	python setup.py bdist_wheel
-	ls -l dist
+publish-to-test: build
+	poetry publish --repository test-pypi
+
+build: clean
+	poetry build
 
 install: clean
-	python setup.py install
+	poetry install --with dev

README.rst

@@ -2,8 +2,8 @@
 ``pipreqs`` - Generate requirements.txt file for any project based on imports
 =============================================================================
 
-.. image:: https://img.shields.io/travis/bndr/pipreqs.svg
-        :target: https://travis-ci.org/bndr/pipreqs
+.. image:: https://github.com/bndr/pipreqs/actions/workflows/tests.yml/badge.svg
+        :target: https://github.com/bndr/pipreqs/actions/workflows/tests.yml
 
 
 .. image:: https://img.shields.io/pypi/v/pipreqs.svg
@@ -21,10 +21,18 @@
 Installation
 ------------
 
-::
+.. code-block:: sh
 
     pip install pipreqs
 
+Obs.: if you don't want support for jupyter notebooks, you can install pipreqs without the dependencies that give support to it. 
+To do so, run:
+
+.. code-block:: sh
+
+    pip install --no-deps pipreqs
+    pip install yarg==0.1.9 docopt==0.6.2
+
 Usage
 -----
 
@@ -47,6 +55,7 @@ Usage
         --debug               Print debug information
         --ignore <dirs>...    Ignore extra directories, each separated by a comma
         --no-follow-links     Do not follow symbolic links in the project
+        --ignore-errors       Ignore errors while scanning files
         --encoding <charset>  Use encoding parameter for file open
         --savepath <file>     Save the list of requirements in the given file
         --print               Output the list of requirements in the standard output
@@ -57,6 +66,7 @@ Usage
                               <compat> | e.g. Flask~=1.1.2
                               <gt>     | e.g. Flask>=1.1.2
                               <no-pin> | e.g. Flask
+        --scan-notebooks      Look for imports in jupyter notebook files.
 
 Example
 -------

pipreqs/__init__.py

@@ -1,3 +1,3 @@
 __author__ = 'Vadim Kravcenko'
 __email__ = 'vadim.kravcenko@gmail.com'
-__version__ = '0.4.11'
+__version__ = '0.4.13'

pipreqs/mapping

@@ -10,6 +10,7 @@ BeautifulSoupTests:BeautifulSoup
 BioSQL:biopython
 BuildbotStatusShields:BuildbotEightStatusShields
 ComputedAttribute:ExtensionClass
+constraint:python-constraint
 Crypto:pycryptodome
 Cryptodome:pycryptodomex
 FSM:pexpect
@@ -35,6 +36,7 @@ Pyxides:astro_pyxis
 QtCore:PySide
 S3:s3cmd
 SCons:pystick
+speech_recognition:SpeechRecognition
 Shared:Zope2
 Signals:Zope2
 Stemmer:PyStemmer
@@ -129,6 +131,7 @@ aios3:aio_s3
 airbrake:airbrake_flask
 airship:airship_icloud
 airship:airship_steamcloud
+airflow:apache-airflow
 akamai:edgegrid_python
 alation:alation_api
 alba_client:alba_client_python
@@ -580,6 +583,7 @@ ctff:tff
 cups:pycups
 curator:elasticsearch_curator
 curl:pycurl
+cv2:opencv-python
 daemon:python_daemon
 dare:DARE
 dateutil:python_dateutil
@@ -718,6 +722,7 @@ jaraco:jaraco.util
 jinja2:Jinja2
 jiracli:jira_cli
 johnny:johnny_cache
+jose:python_jose
 jpgrid:python_geohash
 jpiarea:python_geohash
 jpype:JPype1
@@ -973,6 +978,7 @@ pysynth_samp:PySynth
 pythongettext:python_gettext
 pythonjsonlogger:python_json_logger
 pyutilib:PyUtilib
+pywintypes:pywin32
 pyximport:Cython
 qs:qserve
 quadtree:python_geohash
@@ -1030,9 +1036,10 @@ skbio:scikit_bio
 sklearn:scikit_learn
 slack:slackclient
 slugify:unicode_slugify
+slugify:python-slugify
 smarkets:smk_python_sdk
 snappy:ctypes_snappy
-socketio:gevent_socketio
+socketio:python-socketio
 socketserver:pies2overrides
 sockjs:sockjs_tornado
 socks:SocksiPy_branch
@@ -1061,6 +1068,7 @@ tasksitter:cerebrod
 tastypie:django_tastypie
 teamcity:teamcity_messages
 telebot:pyTelegramBotAPI
+telegram:python-telegram-bot
 tempita:Tempita
 tenjin:Tenjin
 termstyle:python_termstyle

pipreqs/pipreqs.py

@@ -20,6 +20,7 @@ Options:
                           $ export HTTPS_PROXY="https://10.10.1.10:1080"
     --debug               Print debug information
     --ignore <dirs>...    Ignore extra directories, each separated by a comma
+    --ignore-errors       Ignore errors while scanning files
     --no-follow-links     Do not follow symbolic links in the project
     --encoding <charset>  Use encoding parameter for file open
     --savepath <file>     Save the list of requirements in the given file
@@ -31,10 +32,11 @@ Options:
     --clean <file>        Clean up requirements.txt by removing modules
                           that are not imported in project
     --mode <scheme>       Enables dynamic versioning with <compat>,
-                          <gt> or <non-pin> schemes.
+                          <gt> or <no-pin> schemes.
                           <compat> | e.g. Flask~=1.1.2
                           <gt>     | e.g. Flask>=1.1.2
                           <no-pin> | e.g. Flask
+    --scan-notebooks      Look for imports in jupyter notebook files.
 """
 from contextlib import contextmanager
 import os
@@ -50,14 +52,23 @@ from yarg.exceptions import HTTPError
 
 from pipreqs import __version__
 
-REGEXP = [
-    re.compile(r'^import (.+)$'),
-    re.compile(r'^from ((?!\.+).*?) import (?:.*)$')
-]
+REGEXP = [re.compile(r"^import (.+)$"), re.compile(r"^from ((?!\.+).*?) import (?:.*)$")]
+DEFAULT_EXTENSIONS = [".py", ".pyw"]
+
+scan_noteboooks = False
+
+
+class NbconvertNotInstalled(ImportError):
+    default_message = (
+        "In order to scan jupyter notebooks, please install the nbconvert and ipython libraries"
+    )
+
+    def __init__(self, message=default_message):
+        super().__init__(message)
 
 
 @contextmanager
-def _open(filename=None, mode='r'):
+def _open(filename=None, mode="r"):
     """Open a file or ``sys.stdout`` depending on the provided filename.
 
     Args:
@@ -70,13 +81,13 @@ def _open(filename=None, mode='r'):
         A file handle.
 
     """
-    if not filename or filename == '-':
-        if not mode or 'r' in mode:
+    if not filename or filename == "-":
+        if not mode or "r" in mode:
             file = sys.stdin
-        elif 'w' in mode:
+        elif "w" in mode:
             file = sys.stdout
         else:
-            raise ValueError('Invalid mode for file: {}'.format(mode))
+            raise ValueError("Invalid mode for file: {}".format(mode))
     else:
         file = open(filename, mode)
 
@@ -87,13 +98,21 @@ def _open(filename=None, mode='r'):
             file.close()
 
 
-def get_all_imports(
-        path, encoding=None, extra_ignore_dirs=None, follow_links=True):
+def get_all_imports(path, encoding="utf-8", extra_ignore_dirs=None, follow_links=True, ignore_errors=False):
     imports = set()
     raw_imports = set()
     candidates = []
-    ignore_errors = False
-    ignore_dirs = [".hg", ".svn", ".git", ".tox", "__pycache__", "env", "venv"]
+    ignore_dirs = [
+        ".hg",
+        ".svn",
+        ".git",
+        ".tox",
+        "__pycache__",
+        "env",
+        "venv",
+        ".venv",
+        ".ipynb_checkpoints",
+    ]
 
     if extra_ignore_dirs:
         ignore_dirs_parsed = []
@@ -101,19 +120,23 @@ def get_all_imports(
             ignore_dirs_parsed.append(os.path.basename(os.path.realpath(e)))
         ignore_dirs.extend(ignore_dirs_parsed)
 
+    extensions = get_file_extensions()
+
     walk = os.walk(path, followlinks=follow_links)
     for root, dirs, files in walk:
         dirs[:] = [d for d in dirs if d not in ignore_dirs]
 
         candidates.append(os.path.basename(root))
-        files = [fn for fn in files if os.path.splitext(fn)[1] == ".py"]
+        py_files = [file for file in files if file_ext_is_allowed(file, DEFAULT_EXTENSIONS)]
+        candidates.extend([os.path.splitext(filename)[0] for filename in py_files])
+
+        files = [fn for fn in files if file_ext_is_allowed(fn, extensions)]
 
-        candidates += [os.path.splitext(fn)[0] for fn in files]
         for file_name in files:
             file_name = os.path.join(root, file_name)
-            with open(file_name, "r", encoding=encoding) as f:
-                contents = f.read()
+
             try:
+                contents = read_file_content(file_name, encoding)
                 tree = ast.parse(contents)
                 for node in ast.walk(tree):
                     if isinstance(node, ast.Import):
@@ -123,7 +146,7 @@ def get_all_imports(
                         raw_imports.add(node.module)
             except Exception as exc:
                 if ignore_errors:
-                    traceback.print_exc(exc)
+                    traceback.print_exc()
                     logging.warn("Failed on file: %s" % file_name)
                     continue
                 else:
@@ -137,11 +160,11 @@ def get_all_imports(
         # Cleanup: We only want to first part of the import.
         # Ex: from django.conf --> django.conf. But we only want django
         # as an import.
-        cleaned_name, _, _ = name.partition('.')
+        cleaned_name, _, _ = name.partition(".")
         imports.add(cleaned_name)
 
     packages = imports - (set(candidates) & imports)
-    logging.debug('Found packages: {0}'.format(packages))
+    logging.debug("Found packages: {0}".format(packages))
 
     with open(join("stdlib"), "r") as f:
         data = {x.strip() for x in f}
@@ -149,53 +172,96 @@ def get_all_imports(
     return list(packages - data)
 
 
-def filter_line(line):
-    return len(line) > 0 and line[0] != "#"
+def get_file_extensions():
+    return DEFAULT_EXTENSIONS + [".ipynb"] if scan_noteboooks else DEFAULT_EXTENSIONS
+
+
+def read_file_content(file_name: str, encoding="utf-8"):
+    if file_ext_is_allowed(file_name, DEFAULT_EXTENSIONS):
+        with open(file_name, "r", encoding=encoding) as f:
+            contents = f.read()
+    elif file_ext_is_allowed(file_name, [".ipynb"]) and scan_noteboooks:
+        contents = ipynb_2_py(file_name, encoding=encoding)
+    return contents
+
+
+def file_ext_is_allowed(file_name, acceptable):
+    return os.path.splitext(file_name)[1] in acceptable
+
+
+def ipynb_2_py(file_name, encoding="utf-8"):
+    """
+
+    Args:
+        file_name (str): notebook file path to parse as python script
+        encoding  (str): encoding of file
+
+    Returns:
+        str: parsed string
+
+    """
+    exporter = PythonExporter()
+    (body, _) = exporter.from_filename(file_name)
+
+    return body.encode(encoding)
 
 
 def generate_requirements_file(path, imports, symbol):
     with _open(path, "w") as out_file:
-        logging.debug('Writing {num} requirements: {imports} to {file}'.format(
-            num=len(imports),
-            file=path,
-            imports=", ".join([x['name'] for x in imports])
-        ))
-        fmt = '{name}' + symbol + '{version}'
-        out_file.write('\n'.join(
-            fmt.format(**item) if item['version'] else '{name}'.format(**item)
-            for item in imports) + '\n')
+        logging.debug(
+            "Writing {num} requirements: {imports} to {file}".format(
+                num=len(imports), file=path, imports=", ".join([x["name"] for x in imports])
+            )
+        )
+        fmt = "{name}" + symbol + "{version}"
+        out_file.write(
+            "\n".join(
+                fmt.format(**item) if item["version"] else "{name}".format(**item)
+                for item in imports
+            )
+            + "\n"
+        )
 
 
 def output_requirements(imports, symbol):
-    generate_requirements_file('-', imports, symbol)
+    generate_requirements_file("-", imports, symbol)
 
 
-def get_imports_info(
-        imports, pypi_server="https://pypi.python.org/pypi/", proxy=None):
+def get_imports_info(imports, pypi_server="https://pypi.python.org/pypi/", proxy=None):
     result = []
 
     for item in imports:
         try:
-            response = requests.get(
-                "{0}{1}/json".format(pypi_server, item), proxies=proxy)
+            logging.warning(
+                'Import named "%s" not found locally. ' "Trying to resolve it at the PyPI server.",
+                item,
+            )
+            response = requests.get("{0}{1}/json".format(pypi_server, item), proxies=proxy)
             if response.status_code == 200:
-                if hasattr(response.content, 'decode'):
+                if hasattr(response.content, "decode"):
                     data = json2package(response.content.decode())
                 else:
                     data = json2package(response.content)
             elif response.status_code >= 300:
-                raise HTTPError(status_code=response.status_code,
-                                reason=response.reason)
+                raise HTTPError(status_code=response.status_code, reason=response.reason)
         except HTTPError:
-            logging.debug(
-                'Package %s does not exist or network problems', item)
+            logging.warning('Package "%s" does not exist or network problems', item)
             continue
-        result.append({'name': item, 'version': data.latest_release_id})
+        logging.warning(
+            'Import named "%s" was resolved to "%s:%s" package (%s).\n'
+            "Please, verify manually the final list of requirements.txt "
+            "to avoid possible dependency confusions.",
+            item,
+            data.name,
+            data.latest_release_id,
+            data.pypi_url,
+        )
+        result.append({"name": item, "version": data.latest_release_id})
     return result
 
 
-def get_locally_installed_packages(encoding=None):
-    packages = {}
+def get_locally_installed_packages(encoding="utf-8"):
+    packages = []
     ignore = ["tests", "_tests", "egg", "EGG", "info"]
     for path in sys.path:
         for root, dirs, files in os.walk(path):
@@ -205,39 +271,53 @@ def get_locally_installed_packages(encoding=None):
                     with open(item, "r", encoding=encoding) as f:
                         package = root.split(os.sep)[-1].split("-")
                         try:
-                            package_import = f.read().strip().split("\n")
+                            top_level_modules = f.read().strip().split("\n")
                         except:  # NOQA
                             # TODO: What errors do we intend to suppress here?
                             continue
-                        for i_item in package_import:
-                            if ((i_item not in ignore) and
-                                    (package[0] not in ignore)):
-                                version = None
-                                if len(package) > 1:
-                                    version = package[1].replace(
-                                        ".dist", "").replace(".egg", "")
 
-                                packages[i_item] = {
-                                    'version': version,
-                                    'name': package[0]
-                                }
+                        # filter off explicitly ignored top-level modules
+                        # such as test, egg, etc.
+                        filtered_top_level_modules = list()
+
+                        for module in top_level_modules:
+                            if (module not in ignore) and (package[0] not in ignore):
+                                # append exported top level modules to the list
+                                filtered_top_level_modules.append(module)
+
+                        version = None
+                        if len(package) > 1:
+                            version = package[1].replace(".dist", "").replace(".egg", "")
+
+                        # append package: top_level_modules pairs
+                        # instead of top_level_module: package pairs
+                        packages.append(
+                            {
+                                "name": package[0],
+                                "version": version,
+                                "exports": filtered_top_level_modules,
+                            }
+                        )
     return packages
 
 
-def get_import_local(imports, encoding=None):
+def get_import_local(imports, encoding="utf-8"):
     local = get_locally_installed_packages()
     result = []
     for item in imports:
-        if item.lower() in local:
-            result.append(local[item.lower()])
+        # search through local packages
+        for package in local:
+            # if candidate import name matches export name
+            # or candidate import name equals to the package name
+            # append it to the result
+            if item in package["exports"] or item == package["name"]:
+                result.append(package)
 
     # removing duplicates of package/version
-    result_unique = [
-        dict(t)
-        for t in set([
-            tuple(d.items()) for d in result
-        ])
-    ]
+    # had to use second method instead of the previous one,
+    # because we have a list in the 'exports' field
+    # https://stackoverflow.com/questions/9427163/remove-duplicate-dict-in-list-in-python
+    result_unique = [i for n, i in enumerate(result) if i not in result[n + 1:]]
 
     return result_unique
 
@@ -268,7 +348,7 @@ def get_name_without_alias(name):
         match = REGEXP[0].match(name.strip())
         if match:
             name = match.groups(0)[0]
-    return name.partition(' as ')[0].partition('.')[0].strip()
+    return name.partition(" as ")[0].partition(".")[0].strip()
 
 
 def join(f):
@@ -282,6 +362,9 @@ def parse_requirements(file_):
     delimiter, get module name by element index, create a dict consisting of
     module:version, and add dict to list of parsed modules.
 
+    If file ´file_´ is not found in the system, the program will print a
+    helpful message and end its execution immediately.
+
     Args:
         file_: File to parse.
 
@@ -289,7 +372,7 @@ def parse_requirements(file_):
         OSerror: If there's any issues accessing the file.
 
     Returns:
-        tuple: The contents of the file, excluding comments.
+        list: The contents of the file, excluding comments.
     """
     modules = []
     # For the dependency identifier specification, see
@@ -298,9 +381,12 @@ def parse_requirements(file_):
 
     try:
         f = open(file_, "r")
-    except OSError:
-        logging.error("Failed on file: {}".format(file_))
-        raise
+    except FileNotFoundError:
+        print(f"File {file_} was not found. Please, fix it and run again.")
+        sys.exit(1)
+    except OSError as error:
+        logging.error(f"There was an error opening the file {file_}: {str(error)}")
+        raise error
     else:
         try:
             data = [x.strip() for x in f.readlines() if x != "\n"]
@@ -336,8 +422,8 @@ def compare_modules(file_, imports):
         imports (tuple): Modules being imported in the project.
 
     Returns:
-        tuple: The modules not imported in the project, but do exist in the
-               specified file.
+        set: The modules not imported in the project, but do exist in the
+            specified file.
     """
     modules = parse_requirements(file_)
 
@@ -354,7 +440,8 @@ def diff(file_, imports):
 
     logging.info(
         "The following modules are in {} but do not seem to be imported: "
-        "{}".format(file_, ", ".join(x for x in modules_not_imported)))
+        "{}".format(file_, ", ".join(x for x in modules_not_imported))
+    )
 
 
 def clean(file_, imports):
@@ -401,21 +488,57 @@ def dynamic_versioning(scheme, imports):
     return imports, symbol
 
 
+def handle_scan_noteboooks():
+    if not scan_noteboooks:
+        logging.info("Not scanning for jupyter notebooks.")
+        return
+
+    try:
+        global PythonExporter
+        from nbconvert import PythonExporter
+    except ImportError:
+        raise NbconvertNotInstalled()
+
+
 def init(args):
-    encoding = args.get('--encoding')
-    extra_ignore_dirs = args.get('--ignore')
-    follow_links = not args.get('--no-follow-links')
-    input_path = args['<path>']
+    global scan_noteboooks
+    encoding = args.get("--encoding")
+    extra_ignore_dirs = args.get("--ignore")
+    follow_links = not args.get("--no-follow-links")
+    ignore_errors = args.get("--ignore-errors")
+
+    scan_noteboooks = args.get("--scan-notebooks", False)
+    handle_scan_noteboooks()
+
+    input_path = args["<path>"]
+
+    if encoding is None:
+        encoding = "utf-8"
     if input_path is None:
         input_path = os.path.abspath(os.curdir)
 
     if extra_ignore_dirs:
-        extra_ignore_dirs = extra_ignore_dirs.split(',')
+        extra_ignore_dirs = extra_ignore_dirs.split(",")
 
-    candidates = get_all_imports(input_path,
-                                 encoding=encoding,
-                                 extra_ignore_dirs=extra_ignore_dirs,
-                                 follow_links=follow_links)
+    path = (
+        args["--savepath"] if args["--savepath"] else os.path.join(input_path, "requirements.txt")
+    )
+    if (
+        not args["--print"]
+        and not args["--savepath"]
+        and not args["--force"]
+        and os.path.exists(path)
+    ):
+        logging.warning("requirements.txt already exists, " "use --force to overwrite it")
+        return
+
+    candidates = get_all_imports(
+        input_path,
+        encoding=encoding,
+        extra_ignore_dirs=extra_ignore_dirs,
+        follow_links=follow_links,
+        ignore_errors=ignore_errors,
+    )
     candidates = get_pkg_names(candidates)
     logging.debug("Found imports: " + ", ".join(candidates))
     pypi_server = "https://pypi.python.org/pypi/"
@@ -424,26 +547,34 @@ def init(args):
         pypi_server = args["--pypi-server"]
 
     if args["--proxy"]:
-        proxy = {'http': args["--proxy"], 'https': args["--proxy"]}
+        proxy = {"http": args["--proxy"], "https": args["--proxy"]}
 
     if args["--use-local"]:
-        logging.debug(
-            "Getting package information ONLY from local installation.")
+        logging.debug("Getting package information ONLY from local installation.")
         imports = get_import_local(candidates, encoding=encoding)
     else:
         logging.debug("Getting packages information from Local/PyPI")
         local = get_import_local(candidates, encoding=encoding)
-        # Get packages that were not found locally
-        difference = [x for x in candidates
-                      if x.lower() not in [z['name'].lower() for z in local]]
-        imports = local + get_imports_info(difference,
-                                           proxy=proxy,
-                                           pypi_server=pypi_server)
-    # sort imports based on lowercase name of package, similar to `pip freeze`.
-    imports = sorted(imports, key=lambda x: x['name'].lower())
 
-    path = (args["--savepath"] if args["--savepath"] else
-            os.path.join(input_path, "requirements.txt"))
+        # check if candidate name is found in
+        # the list of exported modules, installed locally
+        # and the package name is not in the list of local module names
+        # it add to difference
+        difference = [
+            x
+            for x in candidates
+            if
+            # aggregate all export lists into one
+            # flatten the list
+            # check if candidate is in exports
+            x.lower() not in [y for x in local for y in x["exports"]] and
+            # check if candidate is package names
+            x.lower() not in [x["name"] for x in local]
+        ]
+
+        imports = local + get_imports_info(difference, proxy=proxy, pypi_server=pypi_server)
+    # sort imports based on lowercase name of package, similar to `pip freeze`.
+    imports = sorted(imports, key=lambda x: x["name"].lower())
 
     if args["--diff"]:
         diff(args["--diff"], imports)
@@ -453,21 +584,14 @@ def init(args):
         clean(args["--clean"], imports)
         return
 
-    if (not args["--print"]
-            and not args["--savepath"]
-            and not args["--force"]
-            and os.path.exists(path)):
-        logging.warning("requirements.txt already exists, "
-                        "use --force to overwrite it")
-        return
-
     if args["--mode"]:
         scheme = args.get("--mode")
         if scheme in ["compat", "gt", "no-pin"]:
             imports, symbol = dynamic_versioning(scheme, imports)
         else:
-            raise ValueError("Invalid argument for mode flag, "
-                             "use 'compat', 'gt' or 'no-pin' instead")
+            raise ValueError(
+                "Invalid argument for mode flag, " "use 'compat', 'gt' or 'no-pin' instead"
+            )
     else:
         symbol = "=="
 
@@ -481,8 +605,8 @@ def init(args):
 
 def main():  # pragma: no cover
     args = docopt(__doc__, version=__version__)
-    log_level = logging.DEBUG if args['--debug'] else logging.INFO
-    logging.basicConfig(level=log_level, format='%(levelname)s: %(message)s')
+    log_level = logging.DEBUG if args["--debug"] else logging.INFO
+    logging.basicConfig(level=log_level, format="%(levelname)s: %(message)s")
 
     try:
         init(args)
@@ -490,5 +614,5 @@ def main():  # pragma: no cover
         sys.exit(0)
 
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     main()  # pragma: no cover

poetry.toml

@@ -0,0 +1,2 @@
+[virtualenvs]
+prefer-active-python = true

pyproject.toml

@@ -0,0 +1,53 @@
+[project]
+name = "pipreqs"
+version = "0.5.0"
+description = "Pip requirements.txt generator based on imports in project"
+authors = [
+    { name = "Vadim Kravcenko", email = "vadim.kravcenko@gmail.com" }
+]
+maintainers = [
+    {name = "Jonas Eschle", email = "jonas.eschle@gmail.com"}
+]
+license = "Apache-2.0"
+readme = "README.rst"
+packages = [{ include = "pipreqs" }]
+repository = "https://github.com/bndr/pipreqs"
+keywords = ["pip", "requirements", "imports"]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "License :: OSI Approved :: Apache Software License",
+    "Natural Language :: English",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+]
+requires-python = ">=3.9, <3.14"
+dependencies = [
+    "yarg>=0.1.9",
+    "docopt>=0.6.2",
+    "nbconvert>=7.11.0",
+    "ipython>=8.12.3",
+]
+[project.optional-dependencies]
+dev = [
+    "flake8>=6.1.0",
+    "tox>=4.11.3",
+    "coverage>=7.3.2",
+    "sphinx>=7.2.6;python_version>='3.9'",
+]
+[tool.poetry.group.dev.dependencies]  # for legacy usage
+flake8 = "^6.1.0"
+tox = "^4.11.3"
+coverage = "^7.3.2"
+sphinx = { version = "^7.2.6", python = ">=3.9" }
+
+[project.scripts]
+pipreqs = "pipreqs.pipreqs:main"
+
+[build-system]
+requires = ["poetry-core>=2.0.0,<3.0.0"]
+build-backend = "poetry.core.masonry.api"

requirements.txt

@@ -1,3 +0,0 @@
-wheel==0.23.0
-Yarg==0.1.9
-docopt==0.6.2

setup.cfg

@@ -1,2 +0,0 @@
-[wheel]
-universal = 1

setup.py

@@ -1,57 +0,0 @@
-#!/usr/bin/env python
-
-try:
-    from setuptools import setup
-except ImportError:
-    from distutils.core import setup
-
-from pipreqs import __version__
-
-
-with open('README.rst') as readme_file:
-    readme = readme_file.read()
-
-with open('HISTORY.rst') as history_file:
-    history = history_file.read().replace('.. :changelog:', '')
-
-requirements = [
-    'docopt', 'yarg'
-]
-
-setup(
-    name='pipreqs',
-    version=__version__,
-    description='Pip requirements.txt generator based on imports in project',
-    long_description=readme + '\n\n' + history,
-    author='Vadim Kravcenko',
-    author_email='vadim.kravcenko@gmail.com',
-    url='https://github.com/bndr/pipreqs',
-    packages=[
-        'pipreqs',
-    ],
-    package_dir={'pipreqs':
-                 'pipreqs'},
-    include_package_data=True,
-    package_data={'': ['stdlib', 'mapping']},
-    install_requires=requirements,
-    license='Apache License',
-    zip_safe=False,
-    keywords='pip requirements imports',
-    classifiers=[
-        'Development Status :: 4 - Beta',
-        'Intended Audience :: Developers',
-        'License :: OSI Approved :: Apache Software License',
-        'Natural Language :: English',
-        'Programming Language :: Python :: 3',
-        'Programming Language :: Python :: 3.6',
-        'Programming Language :: Python :: 3.7',
-        'Programming Language :: Python :: 3.8',
-        'Programming Language :: Python :: 3.9',
-    ],
-    test_suite='tests',
-    entry_points={
-        'console_scripts': [
-            'pipreqs=pipreqs.pipreqs:main',
-        ],
-    },
-)

tests/_data/imports.txt

@@ -0,0 +1,3 @@
+pandas==2.0.0
+numpy>=1.2.3
+torch<4.0.0

tests/_data/imports_any_version.txt

@@ -0,0 +1,4 @@
+numpy
+pandas==2.0.0
+tensorflow
+torch<4.0.0

tests/_data/imports_no_version.txt

@@ -0,0 +1,3 @@
+pandas
+tensorflow
+torch

tests/_data_notebook/magic_commands.ipynb

@@ -0,0 +1,65 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Magic test"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "%automagic true"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ls -la\n",
+    "logstate"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ls -la"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "%automagic false"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "ls -la"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "name": "python"
+  },
+  "orig_nbformat": 4
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}

tests/_data_notebook/markdown_test.ipynb

@@ -0,0 +1,37 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Markdown test\n",
+    "import sklearn\n",
+    "\n",
+    "```python\n",
+    "import FastAPI\n",
+    "```"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.1"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

tests/_data_notebook/test.ipynb

@@ -0,0 +1,102 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "\"\"\"unused import\"\"\"\n",
+    "# pylint: disable=undefined-all-variable, import-error, no-absolute-import, too-few-public-methods, missing-docstring\n",
+    "import xml.etree  # [unused-import]\n",
+    "import xml.sax  # [unused-import]\n",
+    "import os.path as test  # [unused-import]\n",
+    "from sys import argv as test2  # [unused-import]\n",
+    "from sys import flags  # [unused-import]\n",
+    "# +1:[unused-import,unused-import]\n",
+    "from collections import deque, OrderedDict, Counter\n",
+    "# All imports above should be ignored\n",
+    "import requests  # [unused-import]\n",
+    "\n",
+    "# setuptools\n",
+    "import zipimport  # command/easy_install.py\n",
+    "\n",
+    "# twisted\n",
+    "from importlib import invalidate_caches  # python/test/test_deprecate.py\n",
+    "\n",
+    "# astroid\n",
+    "import zipimport  # manager.py\n",
+    "# IPython\n",
+    "from importlib.machinery import all_suffixes  # core/completerlib.py\n",
+    "import importlib  # html/notebookapp.py\n",
+    "\n",
+    "from IPython.utils.importstring import import_item  # Many files\n",
+    "\n",
+    "# pyflakes\n",
+    "# test/test_doctests.py\n",
+    "from pyflakes.test.test_imports import Test as TestImports\n",
+    "\n",
+    "# Nose\n",
+    "from nose.importer import Importer, add_path, remove_path  # loader.py\n",
+    "\n",
+    "import atexit\n",
+    "from __future__ import print_function\n",
+    "from docopt import docopt\n",
+    "import curses, logging, sqlite3\n",
+    "import logging\n",
+    "import os\n",
+    "import sqlite3\n",
+    "import time\n",
+    "import sys\n",
+    "import signal\n",
+    "import bs4\n",
+    "import nonexistendmodule\n",
+    "import boto as b, peewee as p\n",
+    "# import django\n",
+    "import flask.ext.somext  # # #\n",
+    "from sqlalchemy import model"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "try:\n",
+    "    import ujson as json\n",
+    "except ImportError:\n",
+    "    import json\n",
+    "\n",
+    "import models\n",
+    "\n",
+    "\n",
+    "def main():\n",
+    "    pass\n",
+    "\n",
+    "import after_method_is_valid_even_if_not_pep8"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.1"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

tests/_data_pyw/py.py

@@ -0,0 +1,5 @@
+import airflow
+import numpy
+
+airflow
+numpy

tests/_data_pyw/pyw.pyw

@@ -0,0 +1,3 @@
+import matplotlib
+import pandas
+import tensorflow

tests/_invalid_data_notebook/invalid.ipynb

@@ -0,0 +1,34 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "cd ."
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.6.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}

tests/test_pipreqs.py

@@ -8,53 +8,93 @@ test_pipreqs
 Tests for `pipreqs` module.
 """
 
+from io import StringIO
+import logging
+from unittest.mock import patch, Mock
 import unittest
 import os
 import requests
+import sys
+import warnings
 
 from pipreqs import pipreqs
 
 
 class TestPipreqs(unittest.TestCase):
 
-    def setUp(self):
-        self.modules = [
-            'flask', 'requests', 'sqlalchemy', 'docopt', 'boto', 'ipython',
-            'pyflakes', 'nose', 'analytics', 'flask_seasurf', 'peewee',
-            'ujson', 'nonexistendmodule', 'bs4',
-            'after_method_is_valid_even_if_not_pep8'
-            ]
-        self.modules2 = ['beautifulsoup4']
-        self.local = ["docopt", "requests", "nose", 'pyflakes']
-        self.project = os.path.join(os.path.dirname(__file__), "_data")
-        self.project_clean = os.path.join(
-            os.path.dirname(__file__),
-            "_data_clean"
-            )
-        self.project_invalid = os.path.join(
-            os.path.dirname(__file__),
-            "_invalid_data"
-            )
-        self.project_with_ignore_directory = os.path.join(
-            os.path.dirname(__file__),
-            "_data_ignore"
-            )
-        self.project_with_duplicated_deps = os.path.join(
-            os.path.dirname(__file__),
-            "_data_duplicated_deps"
-            )
-        self.requirements_path = os.path.join(self.project, "requirements.txt")
-        self.alt_requirement_path = os.path.join(
-            self.project,
-            "requirements2.txt"
-            )
+    @classmethod
+    def setUpClass(cls):
+        # Disable all logs for not spamming the terminal when running tests.
+        logging.disable(logging.CRITICAL)
+
+        # Specific warning not covered by the above command:
+        warnings.filterwarnings("ignore", category=DeprecationWarning, module="jupyter_client")
+
+        cls.modules = [
+            "flask",
+            "requests",
+            "sqlalchemy",
+            "docopt",
+            "boto",
+            "ipython",
+            "pyflakes",
+            "nose",
+            "analytics",
+            "flask_seasurf",
+            "peewee",
+            "ujson",
+            "nonexistendmodule",
+            "bs4",
+            "after_method_is_valid_even_if_not_pep8",
+        ]
+        cls.modules2 = ["beautifulsoup4"]
+        cls.local = ["docopt", "requests", "nose", "pyflakes", "ipython"]
+        cls.project = os.path.join(os.path.dirname(__file__), "_data")
+        cls.empty_filepath = os.path.join(cls.project, "empty.txt")
+        cls.imports_filepath = os.path.join(cls.project, "imports.txt")
+        cls.imports_no_version_filepath = os.path.join(cls.project, "imports_no_version.txt")
+        cls.imports_any_version_filepath = os.path.join(cls.project, "imports_any_version.txt")
+        cls.non_existent_filepath = os.path.join(cls.project, "non_existent_file.txt")
+
+        cls.parsed_packages = [
+            {"name": "pandas", "version": "2.0.0"},
+            {"name": "numpy", "version": "1.2.3"},
+            {"name": "torch", "version": "4.0.0"},
+        ]
+
+        cls.parsed_packages_no_version = [
+            {"name": "pandas", "version": None},
+            {"name": "tensorflow", "version": None},
+            {"name": "torch", "version": None},
+        ]
+
+        cls.parsed_packages_any_version = [
+            {"name": "numpy", "version": None},
+            {"name": "pandas", "version": "2.0.0"},
+            {"name": "tensorflow", "version": None},
+            {"name": "torch", "version": "4.0.0"},
+        ]
+
+        cls.project_clean = os.path.join(os.path.dirname(__file__), "_data_clean")
+        cls.project_invalid = os.path.join(os.path.dirname(__file__), "_invalid_data")
+        cls.project_with_ignore_directory = os.path.join(os.path.dirname(__file__), "_data_ignore")
+        cls.project_with_duplicated_deps = os.path.join(os.path.dirname(__file__), "_data_duplicated_deps")
+
+        cls.requirements_path = os.path.join(cls.project, "requirements.txt")
+        cls.alt_requirement_path = os.path.join(cls.project, "requirements2.txt")
+        cls.non_existing_filepath = "xpto"
+
+        cls.project_with_notebooks = os.path.join(os.path.dirname(__file__), "_data_notebook")
+        cls.project_with_invalid_notebooks = os.path.join(os.path.dirname(__file__), "_invalid_data_notebook")
+
+        cls.python_path_same_imports = os.path.join(os.path.dirname(__file__), "_data/test.py")
+        cls.notebook_path_same_imports = os.path.join(os.path.dirname(__file__), "_data_notebook/test.ipynb")
 
     def test_get_all_imports(self):
         imports = pipreqs.get_all_imports(self.project)
         self.assertEqual(len(imports), 15)
         for item in imports:
-            self.assertTrue(
-                item.lower() in self.modules, "Import is missing: " + item)
+            self.assertTrue(item.lower() in self.modules, "Import is missing: " + item)
         self.assertFalse("time" in imports)
         self.assertFalse("logging" in imports)
         self.assertFalse("curses" in imports)
@@ -72,8 +112,14 @@ class TestPipreqs(unittest.TestCase):
         """
         Test that invalid python files cannot be imported.
         """
-        self.assertRaises(
-            SyntaxError, pipreqs.get_all_imports, self.project_invalid)
+        self.assertRaises(SyntaxError, pipreqs.get_all_imports, self.project_invalid)
+
+    def test_ignore_errors(self):
+        """
+        Test that invalid python files do not raise an exception when ignore_errors is True.
+        """
+        imports = pipreqs.get_all_imports(self.project_invalid, ignore_errors=True)
+        self.assertEqual(len(imports), 0)
 
     def test_get_imports_info(self):
         """
@@ -86,13 +132,14 @@ class TestPipreqs(unittest.TestCase):
         self.assertEqual(len(with_info), 13)
         for item in with_info:
             self.assertTrue(
-                item['name'].lower() in self.modules,
-                "Import item appears to be missing " + item['name'])
+                item["name"].lower() in self.modules,
+                "Import item appears to be missing " + item["name"],
+            )
 
     def test_get_pkg_names(self):
-        pkgs = ['jury', 'Japan', 'camel', 'Caroline']
+        pkgs = ["jury", "Japan", "camel", "Caroline"]
         actual_output = pipreqs.get_pkg_names(pkgs)
-        expected_output = ['camel', 'Caroline', 'Japan', 'jury']
+        expected_output = ["camel", "Caroline", "Japan", "jury"]
         self.assertEqual(actual_output, expected_output)
 
     def test_get_use_local_only(self):
@@ -107,22 +154,33 @@ class TestPipreqs(unittest.TestCase):
         # should find only docopt and requests
         imports_with_info = pipreqs.get_import_local(self.modules)
         for item in imports_with_info:
-            self.assertTrue(item['name'].lower() in self.local)
+            self.assertTrue(item["name"].lower() in self.local)
 
     def test_init(self):
         """
         Test that all modules we will test upon are in requirements file
         """
-        pipreqs.init({'<path>': self.project, '--savepath': None, '--print': False,
-                      '--use-local': None, '--force': True, '--proxy':None, '--pypi-server':None,
-                      '--diff': None, '--clean': None, '--mode': None})
+        pipreqs.init(
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
         assert os.path.exists(self.requirements_path) == 1
         with open(self.requirements_path, "r") as f:
             data = f.read().lower()
             for item in self.modules[:-3]:
                 self.assertTrue(item.lower() in data)
         # It should be sorted based on names.
-        data = data.strip().split('\n')
+        data = data.strip().split("\n")
         self.assertEqual(data, sorted(data))
 
     def test_init_local_only(self):
@@ -130,9 +188,20 @@ class TestPipreqs(unittest.TestCase):
         Test that items listed in requirements.text are the same
         as locals expected
         """
-        pipreqs.init({'<path>': self.project, '--savepath': None, '--print': False,
-                      '--use-local': True, '--force': True, '--proxy':None, '--pypi-server':None,
-                      '--diff': None, '--clean': None, '--mode': None})
+        pipreqs.init(
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": True,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
         assert os.path.exists(self.requirements_path) == 1
         with open(self.requirements_path, "r") as f:
             data = f.readlines()
@@ -145,9 +214,19 @@ class TestPipreqs(unittest.TestCase):
         Test that we can save requirements.txt correctly
         to a different path
         """
-        pipreqs.init({'<path>': self.project, '--savepath': self.alt_requirement_path, 
-                      '--use-local': None, '--proxy':None, '--pypi-server':None,  '--print': False,
-                      '--diff': None, '--clean': None, '--mode': None})
+        pipreqs.init(
+            {
+                "<path>": self.project,
+                "--savepath": self.alt_requirement_path,
+                "--use-local": None,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--print": False,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
         assert os.path.exists(self.alt_requirement_path) == 1
         with open(self.alt_requirement_path, "r") as f:
             data = f.read().lower()
@@ -163,9 +242,20 @@ class TestPipreqs(unittest.TestCase):
         """
         with open(self.requirements_path, "w") as f:
             f.write("should_not_be_overwritten")
-        pipreqs.init({'<path>': self.project, '--savepath': None, '--use-local': None, 
-                      '--force': None, '--proxy':None, '--pypi-server':None, '--print': False,
-                      '--diff': None, '--clean': None, '--mode': None})
+        pipreqs.init(
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--use-local": None,
+                "--force": None,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--print": False,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
         assert os.path.exists(self.requirements_path) == 1
         with open(self.requirements_path, "r") as f:
             data = f.read().lower()
@@ -180,41 +270,49 @@ class TestPipreqs(unittest.TestCase):
         """
         import_name_with_alias = "requests as R"
         expected_import_name_without_alias = "requests"
-        import_name_without_aliases = pipreqs.get_name_without_alias(
-            import_name_with_alias)
-        self.assertEqual(
-            import_name_without_aliases,
-            expected_import_name_without_alias
-            )
+        import_name_without_aliases = pipreqs.get_name_without_alias(import_name_with_alias)
+        self.assertEqual(import_name_without_aliases, expected_import_name_without_alias)
 
     def test_custom_pypi_server(self):
         """
         Test that trying to get a custom pypi sever fails correctly
         """
         self.assertRaises(
-            requests.exceptions.MissingSchema, pipreqs.init,
-            {'<path>': self.project, '--savepath': None, '--print': False,
-             '--use-local': None, '--force': True, '--proxy': None,
-             '--pypi-server': 'nonexistent'}
-            )
+            requests.exceptions.MissingSchema,
+            pipreqs.init,
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": "nonexistent",
+            },
+        )
 
     def test_ignored_directory(self):
         """
         Test --ignore parameter
         """
         pipreqs.init(
-            {'<path>': self.project_with_ignore_directory, '--savepath': None, 
-                      '--print': False, '--use-local': None, '--force': True,
-                      '--proxy':None, '--pypi-server':None,
-                      '--ignore':'.ignored_dir,.ignore_second',
-                      '--diff': None,
-                      '--clean': None,
-                      '--mode': None
-             }
+            {
+                "<path>": self.project_with_ignore_directory,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--ignore": ".ignored_dir,.ignore_second",
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
         )
         with open(os.path.join(self.project_with_ignore_directory, "requirements.txt"), "r") as f:
             data = f.read().lower()
-            for item in ['click', 'getpass']:
+            for item in ["click", "getpass"]:
                 self.assertFalse(item.lower() in data)
 
     def test_dynamic_version_no_pin_scheme(self):
@@ -222,17 +320,22 @@ class TestPipreqs(unittest.TestCase):
         Test --mode=no-pin
         """
         pipreqs.init(
-            {'<path>': self.project_with_ignore_directory, '--savepath': None, 
-             '--print': False, '--use-local': None, '--force': True,
-             '--proxy': None, '--pypi-server': None,
-             '--diff': None,
-             '--clean': None,
-             '--mode': 'no-pin'
-             }
+            {
+                "<path>": self.project_with_ignore_directory,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": "no-pin",
+            }
         )
         with open(os.path.join(self.project_with_ignore_directory, "requirements.txt"), "r") as f:
             data = f.read().lower()
-            for item in ['beautifulsoup4', 'boto']:
+            for item in ["beautifulsoup4", "boto"]:
                 self.assertTrue(item.lower() in data)
 
     def test_dynamic_version_gt_scheme(self):
@@ -240,20 +343,24 @@ class TestPipreqs(unittest.TestCase):
         Test --mode=gt
         """
         pipreqs.init(
-            {'<path>': self.project_with_ignore_directory, '--savepath': None, '--print': False,
-             '--use-local': None, '--force': True,
-             '--proxy': None,
-             '--pypi-server': None,
-             '--diff': None,
-             '--clean': None,
-             '--mode': 'gt'
-             }
+            {
+                "<path>": self.project_with_ignore_directory,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": "gt",
+            }
         )
         with open(os.path.join(self.project_with_ignore_directory, "requirements.txt"), "r") as f:
             data = f.readlines()
             for item in data:
-                symbol = '>='
-                message = 'symbol is not in item'
+                symbol = ">="
+                message = "symbol is not in item"
                 self.assertIn(symbol, item, message)
 
     def test_dynamic_version_compat_scheme(self):
@@ -261,20 +368,24 @@ class TestPipreqs(unittest.TestCase):
         Test --mode=compat
         """
         pipreqs.init(
-            {'<path>': self.project_with_ignore_directory, '--savepath': None, '--print': False,
-             '--use-local': None, '--force': True,
-             '--proxy': None,
-             '--pypi-server': None,
-             '--diff': None,
-             '--clean': None,
-             '--mode': 'compat'
-             }
+            {
+                "<path>": self.project_with_ignore_directory,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": "compat",
+            }
         )
         with open(os.path.join(self.project_with_ignore_directory, "requirements.txt"), "r") as f:
             data = f.readlines()
             for item in data:
-                symbol = '~='
-                message = 'symbol is not in item'
+                symbol = "~="
+                message = "symbol is not in item"
                 self.assertIn(symbol, item, message)
 
     def test_clean(self):
@@ -282,18 +393,34 @@ class TestPipreqs(unittest.TestCase):
         Test --clean parameter
         """
         pipreqs.init(
-            {'<path>': self.project, '--savepath': None, '--print': False,
-             '--use-local': None, '--force': True, '--proxy': None,
-             '--pypi-server': None, '--diff': None, '--clean': None,
-             '--mode': None}
-            )
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
         assert os.path.exists(self.requirements_path) == 1
         pipreqs.init(
-            {'<path>': self.project, '--savepath': None, '--print': False,
-            '--use-local': None, '--force': None, '--proxy': None,
-            '--pypi-server': None, '--diff': None,
-            '--clean': self.requirements_path, '--mode': 'non-pin'}
-            )
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": None,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": self.requirements_path,
+                "--mode": "non-pin",
+            }
+        )
         with open(self.requirements_path, "r") as f:
             data = f.read().lower()
             for item in self.modules[:-3]:
@@ -303,25 +430,255 @@ class TestPipreqs(unittest.TestCase):
         """
         Test --clean parameter when there are imports to clean
         """
-        cleaned_module = 'sqlalchemy'
+        cleaned_module = "sqlalchemy"
         pipreqs.init(
-            {'<path>': self.project, '--savepath': None, '--print': False,
-            '--use-local': None, '--force': True, '--proxy': None,
-            '--pypi-server': None, '--diff': None, '--clean': None,
-            '--mode': None}
-            )
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
         assert os.path.exists(self.requirements_path) == 1
-        modules_clean = [m for m in self.modules if m != cleaned_module]
         pipreqs.init(
-            {'<path>': self.project_clean, '--savepath': None,
-            '--print': False, '--use-local': None, '--force': None,
-            '--proxy': None, '--pypi-server': None, '--diff': None,
-            '--clean': self.requirements_path, '--mode': 'non-pin'}
-            )
+            {
+                "<path>": self.project_clean,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": None,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": self.requirements_path,
+                "--mode": "non-pin",
+            }
+        )
         with open(self.requirements_path, "r") as f:
             data = f.read().lower()
             self.assertTrue(cleaned_module not in data)
 
+    def test_compare_modules(self):
+        test_cases = [
+            (self.empty_filepath, [], set()),  # both empty
+            (self.empty_filepath, self.parsed_packages, set()),  # only file empty
+            (
+                self.imports_filepath,
+                [],
+                set(package["name"] for package in self.parsed_packages),
+            ),  # only imports empty
+            (self.imports_filepath, self.parsed_packages, set()),  # no difference
+            (
+                self.imports_filepath,
+                self.parsed_packages[1:],
+                set([self.parsed_packages[0]["name"]]),
+            ),  # common case
+        ]
+
+        for test_case in test_cases:
+            with self.subTest(test_case):
+                filename, imports, expected_modules_not_imported = test_case
+
+                modules_not_imported = pipreqs.compare_modules(filename, imports)
+
+                self.assertSetEqual(modules_not_imported, expected_modules_not_imported)
+
+    def test_output_requirements(self):
+        """
+        Test --print parameter
+        It should print to stdout the same content as requeriments.txt
+        """
+
+        capturedOutput = StringIO()
+        sys.stdout = capturedOutput
+
+        pipreqs.init(
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": True,
+                "--use-local": None,
+                "--force": None,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
+        pipreqs.init(
+            {
+                "<path>": self.project,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
+
+        with open(self.requirements_path, "r") as f:
+            file_content = f.read().lower()
+            stdout_content = capturedOutput.getvalue().lower()
+            self.assertTrue(file_content == stdout_content)
+
+    def test_import_notebooks(self):
+        """
+        Test the function get_all_imports() using .ipynb file
+        """
+        self.mock_scan_notebooks()
+        imports = pipreqs.get_all_imports(self.project_with_notebooks)
+        for item in imports:
+            self.assertTrue(item.lower() in self.modules, "Import is missing: " + item)
+        not_desired_imports = ["time", "logging", "curses", "__future__", "django", "models", "FastAPI", "sklearn"]
+        for not_desired_import in not_desired_imports:
+            self.assertFalse(
+                not_desired_import in imports,
+                f"{not_desired_import} was imported, but it should not have been."
+            )
+
+    def test_invalid_notebook(self):
+        """
+        Test that invalid notebook files cannot be imported.
+        """
+        self.mock_scan_notebooks()
+        self.assertRaises(SyntaxError, pipreqs.get_all_imports, self.project_with_invalid_notebooks)
+
+    def test_ipynb_2_py(self):
+        """
+        Test the function ipynb_2_py() which converts .ipynb file to .py format
+        """
+        python_imports = pipreqs.get_all_imports(self.python_path_same_imports)
+        notebook_imports = pipreqs.get_all_imports(self.notebook_path_same_imports)
+        self.assertEqual(python_imports, notebook_imports)
+
+    def test_file_ext_is_allowed(self):
+        """
+        Test the  function file_ext_is_allowed()
+        """
+        self.assertTrue(pipreqs.file_ext_is_allowed("main.py", [".py"]))
+        self.assertTrue(pipreqs.file_ext_is_allowed("main.py", [".py", ".ipynb"]))
+        self.assertFalse(pipreqs.file_ext_is_allowed("main.py", [".ipynb"]))
+
+    def test_parse_requirements(self):
+        """
+        Test parse_requirements function
+        """
+        test_cases = [
+            (self.empty_filepath, []),  # empty file
+            (self.imports_filepath, self.parsed_packages),  # imports with versions
+            (
+                self.imports_no_version_filepath,
+                self.parsed_packages_no_version,
+            ),  # imports without versions
+            (
+                self.imports_any_version_filepath,
+                self.parsed_packages_any_version,
+            ),  # imports with and without versions
+        ]
+
+        for test in test_cases:
+            with self.subTest(test):
+                filename, expected_parsed_requirements = test
+
+                parsed_requirements = pipreqs.parse_requirements(filename)
+
+                self.assertListEqual(parsed_requirements, expected_parsed_requirements)
+
+    @patch("sys.exit")
+    def test_parse_requirements_handles_file_not_found(self, exit_mock):
+        captured_output = StringIO()
+        sys.stdout = captured_output
+
+        # This assertion is needed, because since "sys.exit" is mocked, the program won't end,
+        # and the code that is after the except block will be run
+        with self.assertRaises(UnboundLocalError):
+            pipreqs.parse_requirements(self.non_existing_filepath)
+
+            exit_mock.assert_called_once_with(1)
+
+            printed_text = captured_output.getvalue().strip()
+            sys.stdout = sys.__stdout__
+
+            self.assertEqual(printed_text, "File xpto was not found. Please, fix it and run again.")
+
+    def test_ignore_notebooks(self):
+        """
+        Test if notebooks are ignored when the scan-notebooks parameter is False
+        """
+        notebook_requirement_path = os.path.join(self.project_with_notebooks, "requirements.txt")
+
+        pipreqs.init(
+            {
+                "<path>": self.project_with_notebooks,
+                "--savepath": None,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--print": False,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+                "--scan-notebooks": False,
+            }
+        )
+        assert os.path.exists(notebook_requirement_path) == 1
+        assert os.path.getsize(notebook_requirement_path) == 1    # file only has a "\n", meaning it's empty
+
+    def test_pipreqs_get_imports_from_pyw_file(self):
+        pyw_test_dirpath = os.path.join(os.path.dirname(__file__), "_data_pyw")
+        requirements_path = os.path.join(pyw_test_dirpath, "requirements.txt")
+
+        pipreqs.init(
+            {
+                "<path>": pyw_test_dirpath,
+                "--savepath": None,
+                "--print": False,
+                "--use-local": None,
+                "--force": True,
+                "--proxy": None,
+                "--pypi-server": None,
+                "--diff": None,
+                "--clean": None,
+                "--mode": None,
+            }
+        )
+
+        self.assertTrue(os.path.exists(requirements_path))
+
+        expected_imports = [
+            "airflow",
+            "matplotlib",
+            "numpy",
+            "pandas",
+            "tensorflow",
+        ]
+
+        with open(requirements_path, "r") as f:
+            imports_data = f.read().lower()
+            for _import in expected_imports:
+                self.assertTrue(
+                    _import.lower() in imports_data,
+                    f"'{_import}' import was expected but not found.",
+                )
+
+        os.remove(requirements_path)
+
+    def mock_scan_notebooks(self):
+        pipreqs.scan_noteboooks = Mock(return_value=True)
+        pipreqs.handle_scan_noteboooks()
+
     def tearDown(self):
         """
         Remove requiremnts.txt files that were written
@@ -336,5 +693,5 @@ class TestPipreqs(unittest.TestCase):
             pass
 
 
-if __name__ == '__main__':
+if __name__ == "__main__":
     unittest.main()

tox.ini

@@ -1,17 +1,31 @@
 [tox]
-envlist = py36, py37, py38, py39, pypy3, flake8
+isolated_build = true
+envlist = py39, py310, py311, py312, py313, pypy3, flake8
 
 [gh-actions]
 python =
-    3.6: py36
-    3.7: py37
-    3.8: py38
     3.9: py39
-    pypy-3.7: pypy3
+    3.10: py310
+    3.11: py311
+    3.12: py312
+    3.13: py313
+    pypy-3.10: pypy3
 
 [testenv]
 setenv =
     PYTHONPATH = {toxinidir}:{toxinidir}/pipreqs
-commands = python setup.py test
-deps =
-    -r{toxinidir}/requirements.txt
+commands =
+    python -m unittest discover
+
+[testenv:flake8]
+deps = flake8
+commands = flake8 pipreqs tests
+
+[flake8]
+exclude =
+    tests/_data/
+    tests/_data_clean/
+    tests/_data_duplicated_deps/
+    tests/_data_ignore/
+    tests/_invalid_data/
+max-line-length = 120